Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs10413602 chr19:37891492 T/C 1.37E-13 134 45.47 37.53 17.1 KM Plot
TGCT rs10420430 chr19:37894194 C/G 1.77E-13 133 45.1 37.53 17.1 KM Plot
TGCT rs10420722 chr19:37973774 C/G 2.92E-13 131 45.47 36.12 17.1 KM Plot
TGCT rs10422074 chr19:37894236 T/C 1.77E-13 133 45.1 37.53 17.1 KM Plot
TGCT rs10422667 chr19:37937876 T/C 1.77E-13 133 45.83 37.53 17.1 KM Plot
TGCT rs10426618 chr19:37951243 C/T 1.37E-13 134 45.47 37.53 17.1 KM Plot
TGCT rs10431462 chr12:107106546 G/A 0.000103 134 42.27 45.47 28.8 KM Plot
TGCT rs10450761 chr12:107043432 A/G 3.53E-8 132 48.87 45.1 27.93 KM Plot
TGCT rs10467028 chr12:107076405 A/G 0.000113 133 42.27 45.1 28.8 KM Plot
TGCT rs10467029 chr12:107078448 C/T 2.51E-5 133 46.77 45.1 28.8 KM Plot
TGCT rs10491295 chr5:134208028 A/C 1.93E-9 134 13.18 36.1 42.27 KM Plot
TGCT rs10498753 chr6:42571807 A/G 2.74E-8 133 20.6 51.67 37.7 KM Plot
TGCT rs10499278 chr6:157022885 G/A 0.000129 132 40.57 68.97 59.27 KM Plot
TGCT rs10507213 chr12:107129719 A/C 1.87E-10 134 27.93 46.3 42.03 KM Plot
TGCT rs10508359 chr10:8631309 A/C 4.8E-7 132 45.1 33.53 17.58 KM Plot